GaDGeT GlobAl Distribution of GEnetic Traits - is a visual platform for exploring the genetic basis of human phenotypic diversity.
NAR doi: doi.org/10.1093/nar/gky415
TaxADivA TAXonomy Assignment and DIVersity Assessment
RampDB A web application and database for the exploration and prediction of receptor activity modifying protein interactions
Database doi: doi.org/10.1093/database/bax067
stringMLST A fast k-mer based MLST tool
Bioinformatics doi: doi.org/10.1093/bioinformatics/btw586
BroadPeak broad peak calling algorithm for diffuse ChIP-seq datasets.
ChAT - unsupervised algorithm to search combinatorial chromatin signatures.
ChIP-seq ambiguous tag mapper - a Gibbs sampling algorithm for the mapping of ambiguous ChIP-seq sequence tags. A collaboration with the Lunyak laboratory at the Buck Institute for Age Research.
Bioinformatics 26: 2501-2508
[PubMed]
[PDF]
MGIP - a suite of computational tools for the analysis of multi-locus sequence typing (MLST) data. A collaboration with the Meningitis Laboratory at the Centers for Disease Control and Prevention.
Nucleic Acids Res 37: W606-W611
[PubMed]
[PDF]
Computational Genomics Pipeline - an analytical pipeline for the analysis of prokaryotic genome sequences. Includes genome assembly, gene prediction and functional annotation. A collaboration with the Meningitis Laboratory at the Centers for Disease Control and Prevention.
Bioinformatics 26: 1819-1826
[PubMed]
[PDF]
Neisseria Base - An online comparative genomics browser for Neisseria spp. A collaboration with the Meningitis Laboratory at the Centers for Disease Control and Prevention.
Database 2011: bar 035
[PubMed]
[PDF]
HaemoBase a Haemophilus haemolyticus genome database. HaemoBase includes genome and clinical data on five Haemophilus haemolyticus (Hhae) strains and one non-typeable influenzae (NTHi) strain.